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  5. EOD05251

EOD05251


Description : Ribosomal protein S17/S11; 40S ribosomal protein S11, N-terminal [Interproscan].


Gene families : OG_01_0003480 (OrthoFinder) Phylogenetic Tree(s): OG0003480_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD05251
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000551.22 tig00000551_g2043.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder
Cre12.g514500 30792578, RPS11 Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 OrthoFinder
Cz02g12020.t1 No alias Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.21 OrthoFinder
Dusal.0778s00006.1 33199653 Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.03 OrthoFinder
OT_06G01520.1 No alias 40S ribosomal protein S11, N-terminal; Ribosomal protein... 0.23 OrthoFinder
PTI_12G03740.1 No alias Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.19 OrthoFinder
Sro154_g070110.1 Contig2716.g21889 40S ribosomal protein S11 0.25 OrthoFinder
TP05G00420.1 No alias Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.21 OrthoFinder
Vocar.0006s0303.1 32893913 Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.03 OrthoFinder
XM_002501400.1 MICPUN_81184, 81184 Ribosomal protein 0.23 OrthoFinder
XM_003059434.1 MicpuC2_33883, 33883 Ribosomal protein S17/S11; 40S ribosomal protein S11,... 0.09 OrthoFinder
lcl|BLLF01002834.1_cds_GFH25508.1_19985 HaLaN_23487, GFH25508 40S ribosomal protein S11 0.03 OrthoFinder
lcl|BLLF01005325.1_cds_GFH31049.1_25526 HaLaN_30009, GFH31049 Ribosomal_S17_N domain-containing protein 0.12 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61173.1_440 PRW61173 40S ribosomal S11 0.22 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491213.1_5841 KAA8491213 40S ribosomal protein S11 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 81 147
IPR032440 Ribosomal_S11_N 12 78
No external refs found!