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EOD04311


Description : PAP/25A-associated; F-box domain; Zinc finger, CCCH-type; Leucine-rich repeat [Interproscan].


Gene families : OG_01_0001395 (OrthoFinder) Phylogenetic Tree(s): OG0001395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD04311
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_56493 56493 Polymerase, nucleotidyl transferase domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002058 PAP_assoc 1272 1342
IPR001611 Leu-rich_rpt 472 491
IPR001611 Leu-rich_rpt 363 384
IPR001810 F-box_dom 14 38
IPR000571 Znf_CCCH 947 969
No external refs found!