Description : Helicase, C-terminal; Zinc finger, PHD-finger; SNF2-related, N-terminal domain [Interproscan].

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: EOD04122
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
Dusal.0035s00025.1 33196663 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Dusal.0752s00002.1 33199466 Domain of unknown function DUF3535; SNF2-related,... 0.02 OrthoFinder
EOD38452 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Transcript_contig_53936 53936 Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.01 OrthoFinder
Vocar.0016s0256.1 32897896 SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... 0.01 OrthoFinder
XM_003062821.1 MicpuC2_52710, 52710 FY-rich, N-terminal; Helicase, C-terminal; FY-rich,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
BP GO:0006013 mannose metabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:1904680 peptide transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 9 55
IPR001650 Helicase_C 461 593
IPR000330 SNF2_N 150 315
No external refs found!