EOD04007


Description : Cryptochrome/DNA photolyase, FAD-binding domain; DNA photolyase, N-terminal [Interproscan].


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD04007
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000391.2 tig00000391_g24833.t1 DNA damage response.DNA repair... 0.02 OrthoFinder
Cpa|evm.model.tig00020965.69 tig00020965_g16882.t1 Cryptochrome DASH, chloroplastic/mitochondrial... 0.01 OrthoFinder
Cpa|evm.model.tig00021579.19 tig00021579_g22443.t1 Cryptochrome-1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre02.g078939 30785814 Cryptochrome DASH, chloroplastic/mitochondrial... 0.01 OrthoFinder
Cre06.g278251 30779665 DNA damage response.DNA repair... 0.03 OrthoFinder
PTI_05G04390.1 No alias Cryptochrome/DNA photolyase, FAD-binding domain; DNA... 0.01 OrthoFinder
Sro580_g170080.1 Contig2039.g17523 Deoxyribodipyrimidine photo-lyase 0.01 OrthoFinder
Sro82_g043740.1 Contig4032.g30965 Cryptochrome-1 0.02 OrthoFinder
SymbC1.scaffold704.10 704.10 DNA photolyase, N-terminal; Cryptochrome/DNA photolyase,... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 4 169
IPR005101 Cryptochr/Photolyase_FAD-bd 296 484
No external refs found!