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  5. Cpa|evm.model.tig00000144.164

Cpa|evm.model.tig00000144.164 (tig00000144_g9157.t1)


Aliases : tig00000144_g9157.t1

Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM4 component


Gene families : OG_01_0002239 (OrthoFinder) Phylogenetic Tree(s): OG0002239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000144.164
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Cre07.g316850 30774860, MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.13 OrthoFinder
Cz01g46020.t1 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.07 OrthoFinder
Cz01g46030.t1 No alias MCM N-terminal domain; MCM OB domain; MCM domain [Interproscan]. 0.03 OrthoFinder
Dusal.0005s00042.1 33196920 MCM N-terminal domain; MCM domain; MCM OB domain; MCM,... 0.04 OrthoFinder
EOD16047 No alias MCM, AAA-lid domain; MCM domain [Interproscan]. 0.03 OrthoFinder
EOD37691 No alias MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan]. 0.06 OrthoFinder
OT_11G01820.1 No alias MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan]. 0.01 OrthoFinder
OT_14G01130.1 No alias MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;... 0.1 OrthoFinder
TP06G04600.1 No alias MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_53744 53744 MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan]. 0.05 OrthoFinder
Vocar.0003s0114.1 32889118 MCM, AAA-lid domain; MCM N-terminal domain; MCM OB... 0.07 OrthoFinder
lcl|BLLF01000050.1_cds_GFH06666.1_1143 HaLaN_01335, GFH06666 DNA helicase 0.04 OrthoFinder
lcl|BLLF01002444.1_cds_GFH24102.1_18579 HaLaN_21829, GFH24102 DNA helicase 0.09 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59221.1_7052 PRW59221 DNA replication licensing factor MCM4 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492449.1_9142 KAA8492449 DNA replication licensing factor mcm4-B 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006231 dTMP biosynthetic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007346 regulation of mitotic cell cycle IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009265 2'-deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019692 deoxyribose phosphate metabolic process IEP Enrichment
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
BP GO:0033045 regulation of sister chromatid segregation IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046073 dTMP metabolic process IEP Enrichment
BP GO:0046385 deoxyribose phosphate biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0050797 thymidylate synthase (FAD) activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0051983 regulation of chromosome segregation IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Enrichment
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
BP GO:1905818 regulation of chromosome separation IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR027925 MCM_N 95 200
IPR041562 MCM_lid 639 723
IPR001208 MCM_dom 398 620
IPR033762 MCM_OB 207 336
No external refs found!