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  5. Cpa|evm.model.tig00020848.21

Cpa|evm.model.tig00020848.21 (tig00020848_g14548.t1)


Aliases : tig00020848_g14548.t1

Description : Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana


Gene families : OG_01_0001949 (OrthoFinder) Phylogenetic Tree(s): OG0001949_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020848.21
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Cre08.g366400 30773546 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 OrthoFinder
PTI_02G03870.1 No alias Ubiquitin-like domain; Ubiquitin-associated domain;... 0.02 OrthoFinder
Sro219_g090420.1 Contig3313.g25982 Probable ubiquitin receptor 0.06 OrthoFinder
SymbC1.scaffold3151.1 3151.1 Ubiquitin-like domain; Ubiquitin-associated domain;... 0.03 OrthoFinder
Vocar.0020s0028.1 32886611 Ubiquitin-associated domain; XPC-binding domain;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR015360 XPC-bd 287 339
IPR015940 UBA 210 245
IPR000626 Ubiquitin-like_dom 68 138
No external refs found!