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  5. Cpa|evm.model.tig00020830.75

Cpa|evm.model.tig00020830.75 (tig00020830_g14458.t1)


Aliases : tig00020830_g14458.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP2 component


Gene families : OG_01_0002401 (OrthoFinder) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020830.75
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Cre02.g143050 30785883, RPP2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder
Cz11g03220.t1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.08 OrthoFinder
Dusal.0521s00007.1 33197388 60s Acidic ribosomal protein [Interproscan]. 0.03 OrthoFinder
EOD22996 No alias 60s Acidic ribosomal protein [Interproscan]. 0.02 OrthoFinder
OT_15G02430.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.03 OrthoFinder
PTI_20G01490.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.09 OrthoFinder
PTI_21G02280.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.08 OrthoFinder
TP08G04160.1 No alias 60s Acidic ribosomal protein [Interproscan]. 0.03 OrthoFinder
Vocar.0054s0034.1 32894621 60s Acidic ribosomal protein [Interproscan]. 0.01 OrthoFinder
XM_002504932.1 MICPUN_106274, 106274 60s Acidic ribosomal protein [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34006.1_2819 PRW34006 60S acidic ribosomal P2 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494472.1_3002 KAA8494472 60S acidic ribosomal protein P2 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494747.1_3277 KAA8494747 60S acidic ribosomal protein P2 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001514 selenocysteine incorporation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006451 translational readthrough IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!