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  5. Cpa|evm.model.tig00000142.8

Cpa|evm.model.tig00000142.8 (tig00000142_g8641.t2)


Aliases : tig00000142_g8641.t2

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SPF31 pre-mRNA splicing factor


Gene families : OG_01_0000011 (OrthoFinder) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000142.8
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre03.g145127 30786582, ODA11 Cytoskeleton.microtubular network.Dynein... 0.03 OrthoFinder
Cre09.g392282 30780366, DHC2 Cytoskeleton.microtubular network.Dynein... 0.02 OrthoFinder
Cre09.g403800 30780908, ODA4 Cytoskeleton.microtubular network.Dynein... 0.03 OrthoFinder
Cre11.g476050 30775576, ODA2 Cytoskeleton.microtubular network.Dynein... 0.03 OrthoFinder
Dusal.0252s00010.1 33187315 P-loop containing dynein motor region; Dynein heavy... 0.02 OrthoFinder
Dusal.0252s00012.1 33187305 Dynein heavy chain, domain-2 [Interproscan]. 0.01 OrthoFinder
Dusal.0686s00003.1 33191472 Dynein heavy chain region D6 P-loop domain; Dynein heavy... 0.02 OrthoFinder
EOD13626 No alias Dynein heavy chain AAA lid domain; Dynein heavy chain,... 0.02 OrthoFinder
EOD15344 No alias Dynein heavy chain, AAA 5 extension domain; Dynein heavy... 0.02 OrthoFinder
EOD18539 No alias Dynein heavy chain AAA lid domain; Dynein heavy chain,... 0.02 OrthoFinder
EOD33047 No alias Dynein heavy chain 3, AAA+ lid domain; Dynein heavy... 0.01 OrthoFinder
OT_06G04500.1 No alias Dynein heavy chain, domain-1; Dynein heavy chain region... 0.02 OrthoFinder
OT_14G00090.1 No alias Dynein heavy chain, domain-1; Dynein heavy chain region... 0.02 OrthoFinder
SymbC1.scaffold1571.14 1571.14 Dynein heavy chain, coiled coil stalk [Interproscan]. 0.02 OrthoFinder
TP02G09460.1 No alias P-loop containing dynein motor region; Dynein heavy... 0.02 OrthoFinder
Vocar.0001s1061.1 32885451 Dynein heavy chain, coiled coil stalk; Dynein heavy... 0.03 OrthoFinder
Vocar.0008s0338.1 32897436 Dynein heavy chain, coiled coil stalk; Dynein heavy... 0.02 OrthoFinder
Vocar.0022s0148.1 32891765 Dynein heavy chain, coiled coil stalk; Dynein heavy... 0.01 OrthoFinder
Vocar.0031s0108.1 32890040 Dynein heavy chain, coiled coil stalk; Dynein heavy... 0.02 OrthoFinder
XM_002500221.1 MICPUN_78637, 78637 Dynein-1-alpha heavy chain, flagellar inner arm I1... 0.03 OrthoFinder
XM_002500298.1 MICPUN_56610, 56610 Dynein heavy chain (DHC1.3) 0.02 OrthoFinder
XM_002505534.1 MICPUN_104997, 104997 Dynein-1-beta heavy chain, flagellar inner arm I1 complex (DHC10) 0.03 OrthoFinder
XM_002505558.1 MICPUN_104998, 104998 Dynein heavy chain (DHC4) 0.02 OrthoFinder
XM_002505993.1 MICPUN_64231, 64231 Dynein heavy chain (DHC2) 0.04 OrthoFinder
XM_002506711.1 MICPUN_105018, 105018 Dynein beta chain, flagellar outer arm (ODA-DHCB) 0.04 OrthoFinder
XM_002509167.1 MICPUN_96693, 96693 Dynein heavy chain (DHC1.2) 0.02 OrthoFinder
XM_002509319.1 MICPUN_104978, 104978 Dynein heavy chain (DHC3) 0.02 OrthoFinder
XM_003059029.1 MicpuC2_58536, 58536 Dynein heavy chain (DHC) 0.02 OrthoFinder
lcl|BLLF01000711.1_cds_GFH14317.1_8794 HaLaN_10348, GFH14317 ODA2 protein 0.02 OrthoFinder
lcl|BLLF01001974.1_cds_GFH22122.1_16599 HaLaN_19536, GFH22122 Dynein heavy chain, hydrolytic ATP-binding dynein motor... 0.01 OrthoFinder
lcl|BLLF01006708.1_cds_GFH32489.1_26966 HaLaN_31717, GFH32489 Dynein heavy chain, hydrolytic ATP-binding dynein motor... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEA Interproscan
BP GO:0007018 microtubule-based movement IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR035706 AAA_9 1223 1388
IPR041228 Dynein_C 2078 2124
IPR041228 Dynein_C 2017 2076
IPR041228 Dynein_C 2126 2173
IPR024317 Dynein_heavy_chain_D4_dom 771 812
IPR024317 Dynein_heavy_chain_D4_dom 661 769
IPR041466 Dynein_AAA5_ext 230 333
IPR041589 DNAH3_AAA_lid_1 535 624
IPR024743 Dynein_HC_stalk 1002 1124
IPR001623 DnaJ_domain 2182 2241
IPR041658 AAA_lid_11 1881 2008
IPR004273 Dynein_heavy_D6_P-loop 1718 1798
No external refs found!