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  5. Cpa|evm.model.tig00020780.62

Cpa|evm.model.tig00020780.62 (tig00020780_g13811.t1)


Aliases : tig00020780_g13811.t1

Description : Cytoskeleton.actin and tubulin folding.Prefoldin co-chaperone complex.PFD2 component


Gene families : OG_01_0003395 (OrthoFinder) Phylogenetic Tree(s): OG0003395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.62
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre07.g342250 30775302, PFD2 Cytoskeleton.actin and tubulin folding.Prefoldin... 0.06 OrthoFinder
Dusal.1602s00002.1 33194524 Prefoldin beta-like [Interproscan]. 0.03 OrthoFinder
PTI_13G03520.1 No alias Prefoldin beta-like [Interproscan]. 0.02 OrthoFinder
Sro243_g096910.1 Contig3073.g24515 Prefoldin subunit 2 0.02 OrthoFinder
TP03G02470.1 No alias Prefoldin beta-like [Interproscan]. 0.02 OrthoFinder
Vocar.0067s0034.1 32884110 Prefoldin beta-like [Interproscan]. 0.01 OrthoFinder
XM_002502523.1 MICPUN_100598, 100598 Prefoldin beta-like [Interproscan]. 0.03 OrthoFinder
XM_003059205.1 MicpuC2_33990, 33990 Prefoldin beta-like [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEA Interproscan
CC GO:0016272 prefoldin complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002777 PFD_beta-like 9 113
No external refs found!