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  5. Cpa|evm.model.tig00020780.29

Cpa|evm.model.tig00020780.29 (tig00020780_g13782.t1)


Aliases : tig00020780_g13782.t1

Description : RNA processing.RNA decay.exosome complex.EXO9 core complex.RRP45 component


Gene families : OG_01_0000474 (OrthoFinder) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.29
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre03.g175000 30787917 RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder
EOD31518 No alias Exoribonuclease, phosphorolytic domain 2;... 0.03 OrthoFinder
OT_08G03460.1 No alias Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
Sro1649_g288620.1 Contig3529.g27272 Complex component RRP45 0.02 OrthoFinder
Vocar.0068s0001.1 32895511 Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60343.1_4236 PRW60343 Exosome complex component RRP42 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495726.1_1724 KAA8495726 Exosome complex component rrp45 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 32 140
IPR015847 ExoRNase_PH_dom2 170 235
No external refs found!