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  5. Dusal.0097s00006.1

Dusal.0097s00006.1 (33203701)


Aliases : 33203701

Description : Putative 5-3 exonuclease; Xrn1, helical domain; 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, D1 domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0097s00006.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001164.8 tig00001164_g7398.t1 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00021720.19 tig00021720_g23188.t1 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57356.1_8784 PRW57356 Sorting nexin 2B 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499911.1_8864 KAA8499911 5'-3' exoribonuclease 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 275 524
IPR041412 Xrn1_helical 541 603
IPR040992 XRN1_D1 646 697
IPR040992 XRN1_D1 719 792
IPR004859 Put_53exo 1 224
IPR041385 SH3_12 1080 1145
No external refs found!