Cpa|evm.model.tig00020713.11 (tig00020713_g13409.t1)

Aliases : tig00020713_g13409.t1

Description : Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana

Gene families : OG_01_0001406 (OrthoFinder) Phylogenetic Tree(s): OG0001406_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020713.11
Cluster	HCCA: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
Cre16.g661900	30776998	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.03	OrthoFinder
Dusal.0573s00007.1	33189043	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder
Sro89_g047180.1	Contig3846.g29639	Dependent RNA helicase	0.01	OrthoFinder
XM_003057845.1	MicpuC2_2001, 2001	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004527	exonuclease activity	IEP	Enrichment
BP	GO:0006813	potassium ion transport	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	214	326
IPR001650	Helicase_C	403	514

External Links

No external refs found!