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  5. Cpa|evm.model.tig00020710.39

Cpa|evm.model.tig00020710.39 (tig00020710_g13273.t1)


Aliases : tig00020710_g13273.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS3a component


Gene families : OG_01_0002820 (OrthoFinder) Phylogenetic Tree(s): OG0002820_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020710.39
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre13.g568650 30784327, RPS3a Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 OrthoFinder
Cz10g21050.t1 No alias Ribosomal protein S3Ae [Interproscan]. 0.24 OrthoFinder
Dusal.0093s00008.1 33185336 Ribosomal protein S3Ae [Interproscan]. 0.24 OrthoFinder
EOD08172 No alias Ribosomal protein S3Ae [Interproscan]. 0.23 OrthoFinder
EOD18963 No alias Ribosomal protein S3Ae [Interproscan]. 0.2 OrthoFinder
OT_20G00130.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.22 OrthoFinder
PTI_01G05430.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.28 OrthoFinder
Sro174_g076500.1 Contig4298.g32434 40S ribosomal protein S1 0.32 OrthoFinder
Sro920_g220290.1 Contig2508.g20529 40S ribosomal protein S1 0.25 OrthoFinder
SymbC1.scaffold7952.3 7952.3 Ribosomal protein S3Ae [Interproscan]. 0.06 OrthoFinder
TP20G01320.1 No alias Ribosomal protein S3Ae [Interproscan]. 0.34 OrthoFinder
Vocar.0001s0280.1 32885113 Ribosomal protein S3Ae [Interproscan]. 0.09 OrthoFinder
XM_002505213.1 MICPUN_95475, 95475 Ribosomal protein S3Ae [Interproscan]. 0.22 OrthoFinder
XM_003060312.1 MicpuC2_49648, 49648 Ribosomal protein S3Ae [Interproscan]. 0.11 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39385.1_2562 PRW39385 40S ribosomal S3a-2 isoform A 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498213.1_7166 KAA8498213 40S ribosomal protein S3a 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 87 229
IPR001593 Ribosomal_S3Ae 39 84
No external refs found!