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  5. Dusal.0021s00035.1

Dusal.0021s00035.1 (33197774)


Aliases : 33197774

Description : ABC transporter type 1, transmembrane domain [Interproscan].


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dusal.0021s00035.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000227.47 tig00000227_g19839.t1 ABC transporter D family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Transcript_contig_78448 78448 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
XM_002509364.1 MICPUN_62845, 62845 ATP-binding cassette superfamily 0.06 OrthoFinder
XM_003061314.1 MicpuC2_1313, 1313 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|BLLF01000065.1_cds_GFH06943.1_1420 HaLaN_01666, GFH06943 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002518.1_cds_GFH24371.1_18848 HaLaN_22156, GFH24371 ABC transporter domain-containing protein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497386.1_1115 KAA8497386 ABC transporter D family member 2 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494163.1_4027 KAA8494163 ABC transporter D family member 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 81 357
No external refs found!