Cpa|evm.model.tig00020710.129 (tig00020710_g13393.t1)

Aliases : tig00020710_g13393.t1

Description : RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase

Gene families : OG_01_0000212 (OrthoFinder) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020710.129
Cluster	HCCA: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g095121	30785798	RNA processing.RNA...	0.03	OrthoFinder
Cz07g07220.t1	No alias	RNA-binding S4 domain [Interproscan].	0.01	OrthoFinder
OT_06G04650.1	No alias	Pseudouridine synthase, RsuA/RluA; RNA-binding S4 domain...	0.04	OrthoFinder
Vocar.0003s0225.1	32888898	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
XM_002507815.1	MICPUN_69191, 69191	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
XM_002508848.1	MICPUN_72176, 72176	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
XM_003062138.1	MicpuC2_6566, 6566	Pseudouridine synthase, RsuA/RluA [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000013.1_cds_PRW44607.1_2322	PRW44607	Ribosomal large subunit pseudouridine synthase B	0.02	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496505.1_234	KAA8496505	Putative RNA pseudouridine synthase	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Enrichment
MF	GO:0004659	prenyltransferase activity	IEP	Enrichment
CC	GO:0005666	RNA polymerase III complex	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006665	sphingolipid metabolic process	IEP	Enrichment
BP	GO:0006672	ceramide metabolic process	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
MF	GO:0008318	protein prenyltransferase activity	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Enrichment
CC	GO:0030880	RNA polymerase complex	IEP	Enrichment
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	85	222

External Links

No external refs found!