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  5. SymbC1.scaffold9803.2

SymbC1.scaffold9803.2 (9803.2)


Aliases : 9803.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold9803.2
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1030.5 1030.5 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1152.4 1152.4 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold12679.2 12679.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
SymbC1.scaffold1569.6 1569.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1771.4 1771.4 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1790.1 1790.1 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold1947.9 1947.9 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold2028.3 2028.3 Integrase, catalytic core [Interproscan]. 0.09 OrthoFinder
SymbC1.scaffold2297.4 2297.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold280.3 280.3 Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
SymbC1.scaffold301.14 301.14 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.09 OrthoFinder
SymbC1.scaffold3309.1 3309.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold3641.3 3641.3 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold3876.2 3876.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold4098.6 4098.6 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold5249.3 5249.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold5583.1 5583.1 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold7055.1 7055.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
SymbC1.scaffold7159.1 7159.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
SymbC1.scaffold721.4 721.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold7569.1 7569.1 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.04 OrthoFinder
SymbC1.scaffold7700.2 7700.2 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 118 134
No external refs found!