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  5. SymbC1.scaffold968.3

SymbC1.scaffold968.3 (968.3)


Aliases : 968.3

Description : Ribosomal protein L4/L1e; 60S ribosomal protein L4, C-terminal domain [Interproscan].


Gene families : OG_01_0002264 (OrthoFinder) Phylogenetic Tree(s): OG0002264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold968.3
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.53 tig00022075_g23614.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cre09.g397697 30781440, RPL4 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz16g02120.t1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
Dusal.0242s00016.1 33196725 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.01 OrthoFinder
OT_16G01500.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.04 OrthoFinder
PTI_00G01550.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
PTI_12G00050.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
Sro621_g176640.1 Contig1511.g13781 60S ribosomal protein L4 0.03 OrthoFinder
TP05G01880.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
lcl|BLLF01002159.1_cds_GFH22946.1_17423 HaLaN_20485, GFH22946 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495171.1_3701 KAA8495171 60S ribosomal protein L4-A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 25 263
IPR025755 Ribos_L4_C_dom 276 345
No external refs found!