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  5. SymbC1.scaffold958.4

SymbC1.scaffold958.4 (958.4)


Aliases : 958.4

Description : Zinc finger, CCCH-type; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold958.4
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Sro1221_g253660.1 Contig1854.g16190 29 kDa ribonucleoprotein B, chloroplastic 0.01 OrthoFinder
Sro12_g009400.1 Contig2293.g18960 Trans isomerase E 0.01 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 80 149
IPR000571 Znf_CCCH 172 198
No external refs found!