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  5. Cpa|evm.model.tig00020697.31

Cpa|evm.model.tig00020697.31 (tig00020697_g13103.t1)


Aliases : tig00020697_g13103.t1

Description : 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica


Gene families : OG_01_0002677 (OrthoFinder) Phylogenetic Tree(s): OG0002677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020697.31
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre02.g101350 30786442, RPL10a Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cz10g29200.t1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.11 OrthoFinder
Dusal.0201s00008.1 33186098 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.04 OrthoFinder
EOD05341 No alias 60S ribosomal protein L10a [Ensembl]. 0.1 OrthoFinder
EOD37118 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.09 OrthoFinder
OT_04G02990.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.08 OrthoFinder
PTI_12G00410.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.12 OrthoFinder
Sro1425_g271560.1 Contig1471.g13484 60S ribosomal protein L10a (Fragment) 0.15 OrthoFinder
TP06G01830.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.11 OrthoFinder
Transcript_contig_79909 79909 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.02 OrthoFinder
Vocar.0036s0111.1 32892173 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.08 OrthoFinder
XM_002504810.1 MICPUN_95416, 95416 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.1 OrthoFinder
XM_003060702.1 MicpuC2_49658, 49658 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56513.1_9881 PRW56513 60S ribosomal L10a-1 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493814.1_4576 KAA8493814 60S ribosomal protein L10a 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Enrichment
CC GO:0000445 THO complex part of transcription export complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 25 116
No external refs found!