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  5. SymbC1.scaffold9.28

SymbC1.scaffold9.28 (9.28)


Aliases : 9.28

Description : Clp ATPase, C-terminal; ATPase, AAA-type, core; ClpA/ClpB, AAA lid domain; Clp, N-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold9.28
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001416.4 tig00001416_g8951.t1 External stimuli response.temperature.Hsp... 0.02 OrthoFinder
Cpa|evm.model.tig00021365.4 tig00021365_g20819.t1 Chaperone protein ClpB1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g12050.t1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.02 OrthoFinder
PTI_17G01580.1 No alias ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase,... 0.01 OrthoFinder
SymbC1.scaffold5.319 5.319 ABC transporter permease MalE; Glucose/Sorbosone... 0.03 OrthoFinder
SymbC1.scaffold685.19 685.19 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA... 0.03 OrthoFinder
SymbC1.scaffold73.29 73.29 Clp, N-terminal; Adaptor protein ClpS, core; Clp ATPase,... 0.03 OrthoFinder
TP09G00210.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.01 OrthoFinder
Vocar.0001s1202.1 32886168 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61387.1_219 PRW61387 ATP-dependent Clp protease ATP-binding subunit-like... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 19 70
IPR004176 Clp_R_dom 95 146
IPR041546 ClpA/ClpB_AAA_lid 288 391
IPR003959 ATPase_AAA_core 563 727
IPR019489 Clp_ATPase_C 734 814
No external refs found!