SymbC1.scaffold9.140 (9.140)


Aliases : 9.140

Description : Protein of unknown function DUF1559; RNA polymerase sigma-70 region 2; Concanavalin A-like lectin/glucanases superfamily; Prokaryotic N-terminal methylation site [Interproscan].


Gene families : OG_01_0000127 (OrthoFinder) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold9.140
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2365 1.2365 Protein of unknown function DUF1559; Hexapeptide repeat;... 0.03 OrthoFinder
SymbC1.scaffold17.24 17.24 Protein of unknown function DUF1559 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4465.20 4465.20 Protein of unknown function DUF1559; Prokaryotic... 0.03 OrthoFinder
SymbC1.scaffold9.26 9.26 Protein of unknown function DUF1559; Prokaryotic... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030435 sporulation resulting in formation of a cellular spore IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
BP GO:0043934 sporulation IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Enrichment
BP GO:0048869 cellular developmental process IEP Enrichment
InterPro domains Description Start Stop
IPR011453 DUF1559 34 322
IPR012902 N_methyl_site 6 30
IPR007627 RNA_pol_sigma70_r2 461 528
No external refs found!