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  5. SymbC1.scaffold8956.2

SymbC1.scaffold8956.2 (8956.2)


Aliases : 8956.2

Description : Reverse transcriptase domain [Interproscan].


Gene families : OG_01_0000169 (OrthoFinder) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold8956.2
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold110.2 110.2 Ribonuclease H domain [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1187.3 1187.3 C-5 cytosine methyltransferase [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1613.2 1613.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.05 OrthoFinder
SymbC1.scaffold1709.3 1709.3 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold2236.1 2236.1 C-5 cytosine methyltransferase; Reverse transcriptase... 0.06 OrthoFinder
SymbC1.scaffold262.5 262.5 Ribonuclease H domain; Reverse transcriptase domain... 0.07 OrthoFinder
SymbC1.scaffold4890.1 4890.1 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold68.7 68.7 Reverse transcriptase domain [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold7591.2 7591.2 C-5 cytosine methyltransferase; Reverse transcriptase... 0.04 OrthoFinder
SymbC1.scaffold874.6 874.6 Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005436 sodium:phosphate symporter activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
MF GO:0032182 ubiquitin-like protein binding IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0043130 ubiquitin binding IEP Enrichment
BP GO:0044341 sodium-dependent phosphate transport IEP Enrichment
MF GO:0050043 lactate racemase activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 412 549
No external refs found!