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  5. SymbC1.scaffold8225.1

SymbC1.scaffold8225.1 (8225.1)


Aliases : 8225.1

Description : Pumilio RNA-binding repeat [Interproscan].


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold8225.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Dusal.4248s00001.1 33189045 Hypothetical protein 0.01 OrthoFinder
SymbC1.scaffold10345.2 10345.2 Pumilio RNA-binding repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11565.1_6042 HaLaN_07083, GFH11565 Pumilio-family RNA-binding repeatprotein 0.01 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11566.1_6043 HaLaN_07085, GFH11566 Puf protein 0.02 OrthoFinder
lcl|BLLF01004111.1_cds_GFH28940.1_23417 HaLaN_27512, GFH28940 Pumilio family protein 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39206.1_2591 PRW39206 ARM repeat-containing 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 271 298
IPR001313 Pumilio_RNA-bd_rpt 238 262
IPR001313 Pumilio_RNA-bd_rpt 157 188
IPR001313 Pumilio_RNA-bd_rpt 193 215
No external refs found!