SymbC1.scaffold822.1 (822.1)

Aliases : 822.1

Description : Reverse transcriptase, RNA-dependent DNA polymerase; Integrase, catalytic core [Interproscan].

Gene families : OG_01_0001241 (OrthoFinder) Phylogenetic Tree(s): OG0001241_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold822.1
Cluster	HCCA: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold1788.2	1788.2	Reverse transcriptase, RNA-dependent DNA polymerase...	0.03	OrthoFinder
SymbC1.scaffold3848.5	3848.5	Protein prenyltransferase, alpha subunit; Glycosyl...	0.04	OrthoFinder
SymbC1.scaffold810.5	810.5	Hypothetical protein	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1239	1465
IPR001584	Integrase_cat-core	626	737

External Links

No external refs found!