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  5. SymbC1.scaffold814.2

SymbC1.scaffold814.2 (814.2)


Aliases : 814.2

Description : Synaptobrevin; Longin domain; Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0000737 (OrthoFinder) Phylogenetic Tree(s): OG0000737_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold814.2
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
XM_002507754.1 MICPUN_60462, 60462 Synaptobrevin like protein (VAMP) 0.02 OrthoFinder
lcl|BLLF01001076.1_cds_GFH16961.1_11438 HaLaN_13487, GFH16961 Longin domain; Synaptobrevin [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57246.1_9146 PRW57246 Vesicle-associated membrane 714 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 267 292
IPR002885 Pentatricopeptide_repeat 334 359
IPR010908 Longin_dom 37 115
IPR001388 Synaptobrevin 132 218
IPR002885 Pentatricopeptide_repeat 461 509
IPR002885 Pentatricopeptide_repeat 364 410
No external refs found!