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  5. SymbC1.scaffold8093.1

SymbC1.scaffold8093.1 (8093.1)


Aliases : 8093.1

Description : Ribosomal protein L6, alpha-beta domain [Interproscan].


Gene families : OG_01_0003467 (OrthoFinder) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold8093.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001532.12 tig00001532_g9278.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre12.g494050 30792426, RPL9 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Cz02g22040.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.04 OrthoFinder
Dusal.0391s00002.1 33187356 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.07 OrthoFinder
EOD38177 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
OT_04G01760.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
PTI_04G03310.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.05 OrthoFinder
Sro227_g092220.1 Contig327.g4334 60S ribosomal protein L9 0.07 OrthoFinder
TP02G08750.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.06 OrthoFinder
XM_002501436.1 MICPUN_106868, 106868 Ribosomal l9-like protein 0.06 OrthoFinder
XM_003057971.1 MicpuC2_32821, 32821 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58897.1_6880 PRW58897 60S ribosomal L9 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492880.1_2616 KAA8492880 60S ribosomal protein L9-2 0.05 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490502.1_4652 KAA8490502 60S ribosomal protein L9-2 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005750 mitochondrial respiratory chain complex III IEP Enrichment
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019646 aerobic electron transport chain IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0045275 respiratory chain complex III IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 8 69
No external refs found!