1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold809.9

SymbC1.scaffold809.9 (809.9)


Aliases : 809.9

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold809.9
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
EOD36873 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro284_g107920.1 Contig177.g2079 Synovial apoptosis inhibitor 1, synoviolin 0.02 OrthoFinder
SymbC1.scaffold2576.1 2576.1 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold6896.1 6896.1 Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
TP02G01130.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Transcript_contig_1388 1388 Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498945.1_7898 KAA8498945 E3 ubiquitin-protein ligase 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
MF GO:0015099 nickel cation transmembrane transporter activity IEP Enrichment
BP GO:0015675 nickel cation transport IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0035444 nickel cation transmembrane transport IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 156 199
No external refs found!