SymbC1.scaffold7569.1 (7569.1)

Aliases : 7569.1

Description : Reverse transcriptase, RNA-dependent DNA polymerase; Integrase, catalytic core [Interproscan].

Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold7569.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1569.6 1569.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1697.5 1697.5 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold1771.4 1771.4 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
SymbC1.scaffold3612.1 3612.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold9803.2 9803.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1217 1308
IPR013103 RVT_2 1787 2010
No external refs found!