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  5. SymbC1.scaffold75.16

SymbC1.scaffold75.16 (75.16)


Aliases : 75.16

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold75.16
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.104 tig00000093_g3533.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00000880.42 tig00000880_g5200.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020684.6 tig00020684_g12854.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020943.22 tig00020943_g16264.t1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder
Cpa|evm.model.tig00021127.76 tig00021127_g18753.t1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cz10g28200.t1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
EOD04076 No alias Zinc finger, RING-type [Interproscan]. 0.07 OrthoFinder
EOD17424 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
OT_10G01420.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Sro524_g159890.1 Contig202.g2386 Receptor homology region, transmembrane domain- and RING... 0.03 OrthoFinder
TP05G03820.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
XM_002505075.1 MICPUN_62302, 62302 E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon;... 0.02 OrthoFinder
lcl|BLLF01001468.1_cds_GFH19468.1_13945 HaLaN_16418, GFH19468 RING-type domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 28 71
No external refs found!