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  5. SymbC1.scaffold745.1

SymbC1.scaffold745.1 (745.1)


Aliases : 745.1

Description : Thrombospondin type-1 (TSP1) repeat [Interproscan].


Gene families : OG_01_0002877 (OrthoFinder) Phylogenetic Tree(s): OG0002877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold745.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1137.3 1137.3 Zinc finger, MYND-type; Thrombospondin type-1 (TSP1)... 0.02 OrthoFinder
SymbC1.scaffold3479.3 3479.3 Thrombospondin type-1 (TSP1) repeat [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0009251 glucan catabolic process IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
BP GO:0030243 cellulose metabolic process IEP Enrichment
BP GO:0030245 cellulose catabolic process IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044247 cellular polysaccharide catabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044275 cellular carbohydrate catabolic process IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051275 beta-glucan catabolic process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000884 TSP1_rpt 35 79
IPR000884 TSP1_rpt 195 217
IPR000884 TSP1_rpt 87 136
IPR000884 TSP1_rpt 143 185
No external refs found!