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  5. SymbC1.scaffold7419.2

SymbC1.scaffold7419.2 (7419.2)


Aliases : 7419.2

Description : Sodium/calcium exchanger membrane region [Interproscan].


Gene families : OG_01_0000929 (OrthoFinder) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold7419.2
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Sro83_g044260.1 Contig4450.g33400 Sodium/potassium/calcium exchanger 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
InterPro domains Description Start Stop
IPR004837 NaCa_Exmemb 34 148
IPR004837 NaCa_Exmemb 366 514
No external refs found!