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Aliases : 7003.2
Description : Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan].
Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold7003.2 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz04g35200.t1 | No alias | Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. | 0.03 | OrthoFinder | |
| Cz04g36010.t1 | No alias | DNA photolyase, N-terminal [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold4194.2 | 4194.2 | Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. | 0.06 | OrthoFinder | |
| Vocar.0004s0452.1 | 32889791 | Cryptochrome/DNA photolyase, FAD-binding domain [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497133.1_862 | KAA8497133 | (6-4)DNA photolyase | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Enrichment |
| BP | GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | IEP | Enrichment |
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Enrichment |
| BP | GO:0010498 | proteasomal protein catabolic process | IEP | Enrichment |
| BP | GO:0015696 | ammonium transport | IEP | Enrichment |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Enrichment |
| BP | GO:0030163 | protein catabolic process | IEP | Enrichment |
| BP | GO:0031144 | proteasome localization | IEP | Enrichment |
| BP | GO:0031503 | protein-containing complex localization | IEP | Enrichment |
| BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
| BP | GO:0034629 | cellular protein-containing complex localization | IEP | Enrichment |
| BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Enrichment |
| BP | GO:0044248 | cellular catabolic process | IEP | Enrichment |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Enrichment |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
| BP | GO:0071630 | nuclear protein quality control by the ubiquitin-proteasome system | IEP | Enrichment |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005101 | Cryptochr/Photolyase_FAD-bd | 183 | 352 |
| No external refs found! |