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  5. SymbC1.scaffold7.867

SymbC1.scaffold7.867 (7.867)


Aliases : 7.867

Description : ABC-2 type transporter; FAD-binding 9, siderophore-interacting; ABC transporter, permease protein, BtuC-like; Glyoxalase-like domain; ABC transporter-like; Antibiotic biosynthesis monooxygenase domain; Orn/DAP/Arg decarboxylase 2, C-terminal; ABC transporter type 1, transmembrane domain; Siderophore-interacting protein, C-terminal domain; Orn/DAP/Arg decarboxylase 2, N-terminal [Interproscan].


Gene families : OG_01_0001262 (OrthoFinder) Phylogenetic Tree(s): OG0001262_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold7.867
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cz09g15050.t1 No alias Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg... 0.01 OrthoFinder
Sro2087_g313880.1 Contig3974.g30520 Diaminopimelate decarboxylase 0.02 OrthoFinder
Vocar.0001s0603.1 32885024 Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg... 0.01 OrthoFinder
XM_003064468.1 MicpuC2_37004, 37004 Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg... 0.01 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490824.1_5596 KAA8490824 Diaminopimelate decarboxylase 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000156 phosphorelay response regulator activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0008984 protein-glutamate methylesterase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0051723 protein methylesterase activity IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 381 528
IPR025870 Glyoxalase-like_dom 957 1130
IPR013525 ABC_2_trans 3861 4058
IPR013525 ABC_2_trans 4097 4302
IPR007138 ABM_dom 1155 1229
IPR022643 De-COase2_C 1750 1844
IPR003439 ABC_transporter-like_ATP-bd 3554 3697
IPR011527 ABC1_TM_dom 2464 2708
IPR011527 ABC1_TM_dom 3012 3252
IPR000522 ABC_transptr_permease_BtuC 51 357
IPR022644 De-COase2_N 1508 1748
IPR007037 SIP_C 840 944
IPR003439 ABC_transporter-like_ATP-bd 2769 2917
IPR013113 FAD-bd_9_SIP 717 831
IPR003439 ABC_transporter-like_ATP-bd 3320 3469
No external refs found!