1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00020629.36

Cpa|evm.model.tig00020629.36 (tig00020629_g12358.t1)


Aliases : tig00020629_g12358.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13 component


Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020629.36
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre14.g630100 30776357, RPL13 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Cz15g22130.t1 No alias Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan]. 0.25 OrthoFinder
Dusal.0041s00032.1 33194551 Ribosomal protein L13e [Interproscan]. 0.11 OrthoFinder
EOD29349 No alias 60S ribosomal protein L13 [Ensembl]. 0.21 OrthoFinder
OT_05G05020.1 No alias Ribosomal protein L13e [Interproscan]. 0.25 OrthoFinder
PTI_20G02450.1 No alias Ribosomal protein L13e [Interproscan]. 0.4 OrthoFinder
Sro307_g113390.1 Contig2839.g22809 60S ribosomal protein L13-1 0.41 OrthoFinder
SymbC1.scaffold5728.4 5728.4 Ribosomal protein L13e [Interproscan]. 0.04 OrthoFinder
TP04G08470.1 No alias Ribosomal protein L13e [Interproscan]. 0.29 OrthoFinder
Vocar.0006s0140.1 32894315 Ribosomal protein L13e [Interproscan]. 0.06 OrthoFinder
XM_002502479.1 MICPUN_90780, 90780 Ribosomal protein L13e [Interproscan]. 0.32 OrthoFinder
XM_003056868.1 MicpuC2_62462, 62462 Ribosomal protein L13e [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01001412.1_cds_GFH19137.1_13614 HaLaN_16038, GFH19137 60S ribosomal protein L13 0.12 OrthoFinder
lcl|BLLF01008736.1_cds_GFH33502.1_27979 HaLaN_32883, GFH33502 60S ribosomal protein L13 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61522.1_672 PRW61522 60S ribosomal L13-2 0.1 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491921.1_4929 KAA8491921 60S ribosomal protein L13-1 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 8 187
No external refs found!