SymbC1.scaffold685.19 (685.19)

Aliases : 685.19

Description : Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Anticodon-binding; Helix-turn-helix domain; Peptide chain release factor class I; Clp, N-terminal; Peptide chain release factor; Clp ATPase, C-terminal; ATPase, AAA-type, core; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Methyltransferase domain; Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; Domain of unknown function DUF4167; ClpA/ClpB, AAA lid domain; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Release factor glutamine methyltransferase, N-terminal domain; Domain of unknown function DUF4115 [Interproscan].

Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold685.19
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000655.28	tig00000655_g2853.t1	External stimuli response.temperature.Hsp...	0.03	OrthoFinder
Cpa\|evm.model.tig00001416.7	tig00001416_g8954.t1	No description available	0.01	OrthoFinder
Cpa\|evm.model.tig00001416.8	tig00001416_g8954.t1	Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana	0.01	OrthoFinder
Cre10.g465550	30790230, CLPD1	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder
Cre11.g467575	30775868	External stimuli response.temperature.Hsp...	0.02	OrthoFinder
Cz10g08290.t1	No alias	Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;...	0.01	OrthoFinder
Dusal.0238s00006.1	33193657	ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase,...	0.03	OrthoFinder
OT_01G00710.1	No alias	ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal;...	0.02	OrthoFinder
OT_14G01120.1	No alias	Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;...	0.02	OrthoFinder
Sro20_g014290.1	Contig2954.g23459	Protein ClpB	0.01	OrthoFinder
Sro504_g156000.1	Contig4263.g32266	Protein ClpB	0.02	OrthoFinder
Sro910_g219110.1	Contig1356.g12503	Protein ClpB	0.01	OrthoFinder
SymbC1.scaffold1.256	1.256	Beta propeller domain-containing family; Dockerin type I...	0.03	OrthoFinder
SymbC1.scaffold20.292	20.292	Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp,...	0.02	OrthoFinder
SymbC1.scaffold9.28	9.28	Clp ATPase, C-terminal; ATPase, AAA-type, core;...	0.03	OrthoFinder
lcl\|BLLF01002829.1_cds_GFH25488.1_19965	HaLaN_23464, GFH25488	AAA domain-containing protein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006415	translational termination	IEA	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0008883	glutamyl-tRNA reductase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033014	tetrapyrrole biosynthetic process	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043624	cellular protein complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050661	NADP binding	IEA	Interproscan
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005887	integral component of plasma membrane	IEP	Enrichment
BP	GO:0006066	alcohol metabolic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006536	glutamate metabolic process	IEP	Enrichment
BP	GO:0006537	glutamate biosynthetic process	IEP	Enrichment
BP	GO:0006812	cation transport	IEP	Enrichment
BP	GO:0006813	potassium ion transport	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Enrichment
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Enrichment
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Enrichment
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0015675	nickel cation transport	IEP	Enrichment
MF	GO:0015930	glutamate synthase activity	IEP	Enrichment
BP	GO:0016053	organic acid biosynthetic process	IEP	Enrichment
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0019725	cellular homeostasis	IEP	Enrichment
BP	GO:0019751	polyol metabolic process	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0035444	nickel cation transmembrane transport	IEP	Enrichment
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Enrichment
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Enrichment
BP	GO:0044283	small molecule biosynthetic process	IEP	Enrichment
BP	GO:0045454	cell redox homeostasis	IEP	Enrichment
BP	GO:0046164	alcohol catabolic process	IEP	Enrichment
BP	GO:0046174	polyol catabolic process	IEP	Enrichment
BP	GO:0046434	organophosphate catabolic process	IEP	Enrichment
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Enrichment
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Enrichment
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0050789	regulation of biological process	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
MF	GO:0051082	unfolded protein binding	IEP	Enrichment
BP	GO:0065007	biological regulation	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
BP	GO:0071545	inositol phosphate catabolic process	IEP	Enrichment
CC	GO:0098533	ATPase dependent transmembrane transport complex	IEP	Enrichment
CC	GO:0098796	membrane protein complex	IEP	Enrichment
CC	GO:0098797	plasma membrane protein complex	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Enrichment
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Enrichment
CC	GO:1902495	transmembrane transporter complex	IEP	Enrichment
CC	GO:1904949	ATPase complex	IEP	Enrichment
CC	GO:1990351	transporter complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005139	PCRF	1635	1673
IPR005139	PCRF	1523	1634
IPR006151	Shikm_DH/Glu-tRNA_Rdtase	1294	1428
IPR015895	4pyrrol_synth_GluRdtase_N	1129	1278
IPR004176	Clp_R_dom	2272	2323
IPR004176	Clp_R_dom	2194	2246
IPR019489	Clp_ATPase_C	2943	3022
IPR004154	Anticodon-bd	1048	1124
IPR003959	ATPase_AAA_core	2773	2936
IPR025194	DUF4115	310	379
IPR003959	ATPase_AAA_core	2382	2513
IPR041715	HisRS-like_core	731	1033
IPR025714	Methyltranfer_dom	1885	1960
IPR000352	Pep_chain_release_fac_I	1681	1750
IPR040758	PrmC_N	1777	1847
IPR015896	4pyrrol_synth_GluRdtase_dimer	1443	1526
IPR025430	DUF4167	2060	2130
IPR041546	ClpA/ClpB_AAA_lid	2522	2623
IPR004588	IspG_bac-typ	389	710

External Links

No external refs found!

SymbC1.scaffold685.19 (685.19)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation