SymbC1.scaffold685.10 (685.10)

Aliases : 685.10

Description : Carbamoyl-phosphate synthase small subunit, N-terminal domain; Mitochondrial fission protein ELM1-like; Transcription elongation factor, GreA/GreB, C-terminal; Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthetase, large subunit oligomerisation domain; Glutamine amidotransferase; Transcription elongation factor, GreA/GreB, N-terminal [Interproscan].

Gene families : OG_01_0000742 (OrthoFinder) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold685.10
Cluster	HCCA: Cluster_144

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005048	signal sequence binding	IEP	Enrichment
MF	GO:0005506	iron ion binding	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
BP	GO:0006621	protein retention in ER lumen	IEP	Enrichment
BP	GO:0008610	lipid biosynthetic process	IEP	Enrichment
MF	GO:0008830	dTDP-4-dehydrorhamnose 3,5-epimerase activity	IEP	Enrichment
BP	GO:0015833	peptide transport	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0032507	maintenance of protein location in cell	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Enrichment
MF	GO:0042277	peptide binding	IEP	Enrichment
BP	GO:0042886	amide transport	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
BP	GO:0045185	maintenance of protein location	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0046923	ER retention sequence binding	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051235	maintenance of location	IEP	Enrichment
BP	GO:0051651	maintenance of location in cell	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR017926	GATASE	208	366
IPR009367	Elm1-like	1360	1657
IPR001437	Tscrpt_elong_fac_GreA/B_C	1131	1204
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	652	854
IPR022691	Tscrpt_elong_fac_GreA/B_N	1053	1123
IPR011607	MGS-like_dom	936	1021
IPR005480	CarbamoylP_synth_lsu_oligo	431	549
IPR002474	CarbamoylP_synth_ssu_N	16	142

External Links

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SymbC1.scaffold685.10 (685.10)

Expression Profile

Co-expression Networks

Functional Annotation