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  5. SymbC1.scaffold680.2

SymbC1.scaffold680.2 (680.2)


Aliases : 680.2

Description : Ribosomal protein L30, ferredoxin-like fold domain; Ribosomal protein L30, N-terminal [Interproscan].


Gene families : OG_01_0002109 (OrthoFinder) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold680.2
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020909.42 tig00020909_g15363.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder
Cre12.g537800 30791776, RPL7 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Cz10g26010.t1 No alias Hypothetical protein 0.08 OrthoFinder
Dusal.1371s00001.1 33191881 Ribosomal protein L30, ferredoxin-like fold domain;... 0.12 OrthoFinder
EOD11472 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.12 OrthoFinder
EOD41169 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.12 OrthoFinder
OT_03G01610.1 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.05 OrthoFinder
PTI_19G01830.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.15 OrthoFinder
Sro264_g102550.1 Contig921.g9681 60S ribosomal protein L7 0.13 OrthoFinder
SymbC1.scaffold4779.1 4779.1 Ribosomal protein L30, ferredoxin-like fold domain;... 0.03 OrthoFinder
TP02G06700.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.12 OrthoFinder
Vocar.0034s0005.1 32893109 Ribosomal protein L30, N-terminal; Ribosomal protein... 0.07 OrthoFinder
XM_002500889.1 MICPUN_106801, 106801 Ribosomal protein L30, ferredoxin-like fold domain;... 0.09 OrthoFinder
lcl|BLLF01000405.1_cds_GFH11454.1_5931 HaLaN_06953, GFH11454 Ribosomal protein L30, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14862.1_9339 HaLaN_10989, GFH14862 Ribosomal protein L30, ferredoxin-like fold domain;... 0.04 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20371.1_5557 PRW20371 60S ribosomal L7-2 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499623.1_8576 KAA8499623 60S ribosomal protein L7-4 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 26 97
IPR016082 Ribosomal_L30_ferredoxin-like 102 152
No external refs found!