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  5. Cpa|evm.model.tig00020629.20

Cpa|evm.model.tig00020629.20 (tig00020629_g12339.t1)


Aliases : tig00020629_g12339.t1

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.cargo adaptor F-subcomplex.gamma subunit


Gene families : OG_01_0003039 (OrthoFinder) Phylogenetic Tree(s): OG0003039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020629.20
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre06.g310750 30779296, COPG1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cz03g11160.t1 No alias Coatomer, gamma subunit, appendage, Ig-like subdomain;... 0.04 OrthoFinder
Dusal.0055s00019.1 33187651 Coatomer, gamma subunit, appendage, Ig-like subdomain;... 0.02 OrthoFinder
EOD15252 No alias COPG1, gamma subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
EOD40772 No alias Coatomer protein gamma 2 subunit [Ensembl]. 0.01 OrthoFinder
PTI_03G02160.1 No alias Coatomer, gamma subunit, appendage, Ig-like subdomain;... 0.03 OrthoFinder
Sro26_g017600.1 Contig2432.g19931 Coatomer subunit gamma 0.07 OrthoFinder
Transcript_contig_54351 54351 Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.03 OrthoFinder
Vocar.0015s0087.1 32898976 Coatomer subunit gamma, C-terminal; Coatomer, gamma... 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57449.1_9136 PRW57449 Coatomer subunit gamma 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497194.1_923 KAA8497194 Coatomer subunit gamma-2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007051 spindle organization IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0018298 protein-chromophore linkage IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051225 spindle assembly IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
InterPro domains Description Start Stop
IPR013040 Coatomer_gsu_app_Ig-like_dom 601 735
IPR002553 Clathrin/coatomer_adapt-like_N 30 471
IPR032154 Coatomer_g_Cpla 738 843
No external refs found!