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  5. Cpa|evm.model.tig00020629.10

Cpa|evm.model.tig00020629.10 (tig00020629_g12331.t1)


Aliases : tig00020629_g12331.t1

Description : Probable histidine kinase 3 OS=Oryza sativa subsp. indica


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020629.10
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000190.40 tig00000190_g13861.t1 Ethylene receptor OS=Nicotiana tabacum 0.04 OrthoFinder
Cpa|evm.model.tig00020553.260 tig00020553_g10746.t1 Probable histidine kinase 6 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder
Cpa|evm.model.tig00020563.39 tig00020563_g11222.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020904.27 tig00020904_g15159.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00020943.57 tig00020943_g16300.t1 Ethylene receptor OS=Malus domestica 0.03 OrthoFinder
Cpa|evm.model.tig00021137.20 tig00021137_g18985.t1 Ethylene receptor 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
XM_002509139.1 MICPUN_52624, 52624 Signal transduction response regulator, receiver domain... 0.01 OrthoFinder
lcl|BLLF01000561.1_cds_GFH12981.1_7458 HaLaN_08775, GFH12981 Signal transduction histidine kinase,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR003594 HATPase_C 528 673
IPR003661 HisK_dim/P 415 480
IPR000014 PAS 347 393
IPR013767 PAS_fold 191 285
IPR001789 Sig_transdc_resp-reg_receiver 1270 1407
No external refs found!