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  5. SymbC1.scaffold6405.5

SymbC1.scaffold6405.5 (6405.5)


Aliases : 6405.5

Description : EF-hand domain [Interproscan].


Gene families : OG_01_0000037 (OrthoFinder) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold6405.5
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000692.65 tig00000692_g3264.t1 Calmodulin-2 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder
Cpa|evm.model.tig00001388.4 tig00001388_g8574.t1 Caltractin OS=Scherffelia dubia 0.02 OrthoFinder
Cpa|evm.model.tig00021435.47 tig00021435_g21427.t1 Calmodulin OS=Mougeotia scalaris 0.01 OrthoFinder
Cpa|evm.model.tig00021720.13 tig00021720_g23183.t1 RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder
Cre11.g468450 30775984 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder
TP04G02920.1 No alias EF-hand domain [Interproscan]. 0.02 OrthoFinder
TP07G01950.1 No alias EF-hand domain [Interproscan]. 0.01 OrthoFinder
XM_003056806.1 MicpuC2_49514, 49514 Caltractin 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 13 73
IPR002048 EF_hand_dom 83 146
No external refs found!