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Aliases : 6253.2
Description : Zinc finger, CCHC-type [Interproscan].
Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold6253.2 | |
| Cluster | HCCA: Cluster_185 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SymbC1.scaffold1030.5 | 1030.5 | Zinc finger, CCHC-type; Reverse transcriptase,... | 0.04 | OrthoFinder | |
| SymbC1.scaffold10380.1 | 10380.1 | Integrase, catalytic core [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold11335.1 | 11335.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold1152.4 | 1152.4 | Hypothetical protein | 0.04 | OrthoFinder | |
| SymbC1.scaffold124.6 | 124.6 | Integrase, catalytic core [Interproscan]. | 0.02 | OrthoFinder | |
| SymbC1.scaffold12679.2 | 12679.2 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.06 | OrthoFinder | |
| SymbC1.scaffold1555.1 | 1555.1 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold166.9 | 166.9 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold1771.4 | 1771.4 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold1790.1 | 1790.1 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold1947.9 | 1947.9 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold2028.3 | 2028.3 | Integrase, catalytic core [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold2072.2 | 2072.2 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold2297.4 | 2297.4 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold2374.4 | 2374.4 | Hypothetical protein | 0.09 | OrthoFinder | |
| SymbC1.scaffold280.3 | 280.3 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| SymbC1.scaffold301.14 | 301.14 | Hypothetical protein | 0.04 | OrthoFinder | |
| SymbC1.scaffold329.2 | 329.2 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.07 | OrthoFinder | |
| SymbC1.scaffold3297.5 | 3297.5 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold3309.1 | 3309.1 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.04 | OrthoFinder | |
| SymbC1.scaffold3612.1 | 3612.1 | Zinc finger, CCHC-type [Interproscan]. | 0.06 | OrthoFinder | |
| SymbC1.scaffold3641.3 | 3641.3 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold372.4 | 372.4 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold3876.2 | 3876.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold4098.6 | 4098.6 | Zinc finger, CCHC-type [Interproscan]. | 0.05 | OrthoFinder | |
| SymbC1.scaffold4165.2 | 4165.2 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold5249.3 | 5249.3 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold5422.1 | 5422.1 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold5583.1 | 5583.1 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold692.1 | 692.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold7055.1 | 7055.1 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.02 | OrthoFinder | |
| SymbC1.scaffold7099.2 | 7099.2 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold7159.1 | 7159.1 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.06 | OrthoFinder | |
| SymbC1.scaffold7159.4 | 7159.4 | C-5 cytosine methyltransferase; Zinc finger, CCHC-type... | 0.02 | OrthoFinder | |
| SymbC1.scaffold720.6 | 720.6 | Zinc finger, CCHC-type [Interproscan]. | 0.02 | OrthoFinder | |
| SymbC1.scaffold7411.1 | 7411.1 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold8751.1 | 8751.1 | Hypothetical protein | 0.07 | OrthoFinder | |
| SymbC1.scaffold8765.4 | 8765.4 | Hypothetical protein | 0.09 | OrthoFinder | |
| SymbC1.scaffold9481.1 | 9481.1 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold9803.2 | 9803.2 | Zinc finger, CCHC-type [Interproscan]. | 0.06 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
| MF | GO:0004127 | cytidylate kinase activity | IEP | Enrichment |
| BP | GO:0006541 | glutamine metabolic process | IEP | Enrichment |
| BP | GO:0006542 | glutamine biosynthetic process | IEP | Enrichment |
| MF | GO:0015002 | obsolete heme-copper terminal oxidase activity | IEP | Enrichment |
| MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Enrichment |
| MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Enrichment |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Enrichment |
| MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Enrichment |
| MF | GO:0070402 | NADPH binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001878 | Znf_CCHC | 333 | 348 |
| No external refs found! |