SymbC1.scaffold6228.1 (6228.1)

Aliases : 6228.1

Description : Pumilio RNA-binding repeat [Interproscan].

Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold6228.1
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020878.26	tig00020878_g14874.t1	Pumilio homolog 12 OS=Arabidopsis thaliana	0.01	OrthoFinder
Dusal.4248s00001.1	33189045	Hypothetical protein	0.01	OrthoFinder
Sro29_g018990.1	Contig1384.g12742	Pumilio homolog	0.02	OrthoFinder
SymbC1.scaffold4817.1	4817.1	Hypothetical protein	0.03	OrthoFinder
SymbC1.scaffold6862.2	6862.2	Pumilio RNA-binding repeat [Interproscan].	0.04	OrthoFinder
TP05G01840.1	No alias	Pumilio RNA-binding repeat [Interproscan].	0.01	OrthoFinder
TP05G08020.1	No alias	Pumilio RNA-binding repeat [Interproscan].	0.01	OrthoFinder
XM_003059264.1	MicpuC2_17677, 17677	Pumilio RNA-binding repeat [Interproscan].	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	Enrichment
BP	GO:0009190	cyclic nucleotide biosynthetic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001313	Pumilio_RNA-bd_rpt	172	204
IPR001313	Pumilio_RNA-bd_rpt	207	235

External Links

No external refs found!