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  5. SymbC1.scaffold6105.1

SymbC1.scaffold6105.1 (6105.1)


Aliases : 6105.1

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold6105.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020848.31 tig00020848_g14558.t1 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Vocar.0031s0076.1 32890136 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
XM_003062439.1 MicpuC2_29315, 29315 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.02 OrthoFinder
lcl|BLLF01000272.1_cds_GFH09887.1_4364 HaLaN_05112, GFH09887 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 329 435
IPR011545 DEAD/DEAH_box_helicase_dom 112 275
No external refs found!