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  5. SymbC1.scaffold5914.4

SymbC1.scaffold5914.4 (5914.4)


Aliases : 5914.4

Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0001241 (OrthoFinder) Phylogenetic Tree(s): OG0001241_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5914.4
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1788.2 1788.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.01 OrthoFinder
SymbC1.scaffold5209.1 5209.1 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.09 OrthoFinder
SymbC1.scaffold6557.1 6557.1 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
SymbC1.scaffold6558.1 6558.1 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold810.5 810.5 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold816.7 816.7 Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 105 326
No external refs found!