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  5. SymbC1.scaffold588.6

SymbC1.scaffold588.6 (588.6)


Aliases : 588.6

Description : Hypothetical protein


Gene families : OG_01_0001243 (OrthoFinder) Phylogenetic Tree(s): OG0001243_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold588.6
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1097.4 1097.4 Zinc finger, CCHC-type; Reverse transcriptase,... 0.07 OrthoFinder
SymbC1.scaffold11564.1 11564.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold11564.2 11564.2 Zinc finger, GRF-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold13709.1 13709.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
SymbC1.scaffold253.5 253.5 Zinc finger, GRF-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3556.2 3556.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
SymbC1.scaffold6396.2 6396.2 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.02 OrthoFinder
SymbC1.scaffold9370.2 9370.2 Integrase, catalytic core; Zinc finger, GRF-type [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
MF GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment

No InterPro domains available for this sequence

No external refs found!