SymbC1.scaffold5865.1 (5865.1)

Aliases : 5865.1

Description : Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain; Glutamine amidotransferase; Carbamoyl-phosphate synthase small subunit, N-terminal domain [Interproscan].

Gene families : OG_01_0000742 (OrthoFinder) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold5865.1
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358580	30774147, CMP1	Nucleotide metabolism.pyrimidines.ribonucleotide...	0.01	OrthoFinder
OT_08G02520.1	No alias	Carbamoyl-phosphate synthetase, large subunit...	0.02	OrthoFinder
Sro2246_g320570.1	Contig1042.g10302	Carbamoyl-phosphate synthase large chain	0.01	OrthoFinder
Sro3521_g348890.1	Contig4377.g32917	Carbamoyl-phosphate synthase large chain	0.01	OrthoFinder
lcl\|LHPG02000015.1_cds_PRW33984.1_3144	PRW33984	Carbamoyl-phosphate synthase large chloroplastic	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Enrichment
MF	GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	IEP	Enrichment
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Enrichment
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006551	leucine metabolic process	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
BP	GO:0009098	leucine biosynthetic process	IEP	Enrichment
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Enrichment
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
MF	GO:0017069	snRNA binding	IEP	Enrichment
MF	GO:0017070	U6 snRNA binding	IEP	Enrichment
MF	GO:0022804	active transmembrane transporter activity	IEP	Enrichment
MF	GO:0030623	U5 snRNA binding	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002474	CarbamoylP_synth_ssu_N	36	170
IPR017926	GATASE	259	287
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	326	478

External Links

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SymbC1.scaffold5865.1 (5865.1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation