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  5. SymbC1.scaffold5627.3

SymbC1.scaffold5627.3 (5627.3)


Aliases : 5627.3

Description : Ribosomal protein L32e [Interproscan].


Gene families : OG_01_0003368 (OrthoFinder) Phylogenetic Tree(s): OG0003368_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: SymbC1.scaffold5627.3
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020554.140 tig00020554_g10919.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre06.g289550 30780114, RPL32 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Cz11g16180.t1 No alias Ribosomal protein L32e [Interproscan]. 0.1 OrthoFinder
Dusal.0931s00005.1 33189912 Ribosomal protein L32e [Interproscan]. 0.1 OrthoFinder
EOD35360 No alias Ribosomal protein L32e [Interproscan]. 0.06 OrthoFinder
EOD35362 No alias Ribosomal protein L32e [Interproscan]. 0.06 OrthoFinder
OT_04G01320.1 No alias Ribosomal protein L32e [Interproscan]. 0.03 OrthoFinder
PTI_13G03600.1 No alias Ribosomal protein L32e [Interproscan]. 0.08 OrthoFinder
Sro182_g079470.1 Contig1301.g12083 60S ribosomal protein L32 0.11 OrthoFinder
TP12G00110.1 No alias Ribosomal protein L32e [Interproscan]. 0.13 OrthoFinder
Vocar.0001s1497.1 32884164 Ribosomal protein L32e [Interproscan]. 0.08 OrthoFinder
XM_002508155.1 MICPUN_91456, 91456 Ribosomal protein L32e [Interproscan]. 0.11 OrthoFinder
XM_003057642.1 MicpuC2_49537, 49537 Ribosomal protein L32e [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000296.1_cds_GFH10216.1_4693 HaLaN_05489, GFH10216 Ribosomal protein L32e [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44541.1_2370 PRW44541 60S ribosomal L32-1 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494591.1_3121 KAA8494591 60S ribosomal protein L32 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009539 photosystem II reaction center IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001515 Ribosomal_L32e 15 122
No external refs found!