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  5. SymbC1.scaffold556.1

SymbC1.scaffold556.1 (556.1)


Aliases : 556.1

Description : Pirin, C-terminal domain; NAD-dependent epimerase/dehydratase; Pirin, N-terminal domain [Interproscan].


Gene families : OG_01_0000271 (OrthoFinder) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold556.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Cz14g18230.t1 No alias NAD-dependent epimerase/dehydratase [Interproscan]. 0.01 OrthoFinder
Dusal.0257s00002.1 33197508 NAD-dependent epimerase/dehydratase [Interproscan]. 0.01 OrthoFinder
EOD16008 No alias NAD-dependent epimerase/dehydratase [Interproscan]. 0.03 OrthoFinder
Sro1267_g257690.1 Contig3174.g25102 Anthocyanidin reductase ((2S)-flavan-3-ol-forming) 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499494.1_8447 KAA8499494 Putative oxidoreductase 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499495.1_8448 KAA8499495 Putative oxidoreductase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006144 purine nucleobase metabolic process IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009113 purine nucleobase biosynthetic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 18 230
IPR008778 Pirin_C_dom 628 730
IPR003829 Pirin_N_dom 468 573
No external refs found!