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  5. SymbC1.scaffold550.3

SymbC1.scaffold550.3 (550.3)


Aliases : 550.3

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold550.3
Cluster HCCA: Cluster_330

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1030.5 1030.5 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold1152.4 1152.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold124.6 124.6 Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold12679.2 12679.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold13830.1 13830.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold166.9 166.9 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1790.1 1790.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold2028.3 2028.3 Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold277.5 277.5 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold301.14 301.14 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold3082.1 3082.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold3612.1 3612.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold372.4 372.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold4098.6 4098.6 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5422.1 5422.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold5583.1 5583.1 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold692.1 692.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold7159.1 7159.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
SymbC1.scaffold720.6 720.6 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold7247.3 7247.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7411.1 7411.1 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 308 323
No external refs found!