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  5. SymbC1.scaffold5424.4

SymbC1.scaffold5424.4 (5424.4)


Aliases : 5424.4

Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0002343 (OrthoFinder) Phylogenetic Tree(s): OG0002343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5424.4
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold293.3 293.3 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold3510.1 3510.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3690.5 3690.5 Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold6064.1 6064.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold96.1 96.1 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 231 400
No external refs found!